Scaffold Ga0209535_1004435

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1004435
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8737
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F009812	Metagenome	312	Y
F030928	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100443510	F000720	GAGG	MNLIKEDKIVRATIPDRMMSTTFTLPIDDRKVVGIVNYIADINGVTPMAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMANYLHKNMDDIIMGVPTDKKQRMLSTDPYASQMKE
Ga0209535_100443511	F009812	N/A	MEEFEIEWIPESANDCFTEIPAHTIDKLCKAKYGHTNWARMGQMSPEELLGNPCDFDYDNGVIYFKSAHMV
Ga0209535_10044356	F003020	N/A	MLTKGKIMPDISRFKSVSVSMNTHEKLINLAQNRFEVPVSVQKIIEFLLEKEMKKRKNGKTR
Ga0209535_10044357	F004988	N/A	MVKLVETICPRCNGNGYIRVQDVLGEDMMEIDCPMCEEEFMHFGLKVKTYNGYVMLPVEDTRKNIEGGRESKSKWSGETLPEVGKL
Ga0209535_10044359	F030928	AGG	MNNEFKTALEKYINTCILGFAILICLIVIVVNSRYIIKLESTIDTMWHEIEQVKETNISLYQFIEEHENEFD