Scaffold Ga0209535_1004028

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1004028
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9251
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F007826	Metagenome	344	Y
F051541	Metagenome	144	N
F076167	Metagenome	118	N
F104045	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100402814	F051541	N/A	MNPTMNHELEQKKEVNPLKDLAKAVITRACLDSLGHITNSSYCGTTEKSILMDTAKRFFDPSIKSFRLWCDLAGGEPEYVRDLHNDLTYHYNCGKLKNFNTRTVIEILLKKL
Ga0209535_100402816	F007826	AGGA	MNRKTEFTFKLLNLIKKCREKGKFQLAIKIIDKHKLDKRKLEEEYYD
Ga0209535_100402820	F001086	GAGG	MRYKKPYKCTGWAIVATIERKDNTWYTDTITEIDDDTASSVDTFLTDYIKEKNKEEENK
Ga0209535_100402821	F104045	GAGG	MSVDGKSEWLENKAVELFEEIQRKNPHLSWIEIDELCYKQAEEDYMNQPEVDYKKINEEYAEEE
Ga0209535_100402823	F076167	N/A	METEKNYLIKVFGLGYTGQYTLPLSGIVDVDRINDEATHLILTKKLSLSKDKFYSQDVRITYEEL