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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025120 Open in IMG/M |
| Scaffold ID | Ga0209535_1003195 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10487 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (86.21%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001521 | Metagenome / Metatranscriptome | 679 | Y |
| F007645 | Metagenome / Metatranscriptome | 347 | Y |
| F009922 | Metagenome | 311 | Y |
| F010878 | Metagenome / Metatranscriptome | 298 | Y |
| F029428 | Metagenome / Metatranscriptome | 188 | Y |
| F032048 | Metagenome / Metatranscriptome | 181 | Y |
| F035272 | Metagenome / Metatranscriptome | 172 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209535_100319510 | F035272 | AGGAGG | MMTYKQWCNLRELLTTLSDEVDSKVCDDKVSEAFDDVWDMVDEIDTTQEIT |
| Ga0209535_100319516 | F007645 | GGAG | MAKIVYGKRNTTTVDSIYDYGSISEKAIWNYANSLGVNIIRVRASKERYETTTGDTFNGYHSGKVSIYQQKPKPNKPLHFVRRTPLGKDNKGMQILEVATNIDTQEVLKTLQDYEYYTTNSFFARLKMSFTRLFA |
| Ga0209535_100319520 | F009922 | AGGAG | MENTFDINSFDKDRTTSPASFKQCQAVAYKFAKTGDKMNWKLQKQIQGCLYSLAKDDRLNFKKAHTLLQGKSLPKVYLDKIALYLKENS |
| Ga0209535_100319523 | F001521 | GAGG | MIVSKTMTRLWITEHVNEEGSAIGPYIKADTIAQANRIAIQYGLMVLGEIQELQHDDSQQKRIVH |
| Ga0209535_100319525 | F029428 | AGG | MGKQIGNDEGSQVTFRKSIYGKSDGGKGARPRPFAISKKEYEDNWDRIFGGDKDANKEKE |
| Ga0209535_10031958 | F032048 | GAGG | MMSNIHNERTLEQIYEQVLEDDAKLLLTEEIDEICYLYELHADDDRETILEFLAESIYYNQHTMEVAK |
| Ga0209535_10031959 | F010878 | AGGAG | MKITAWNIGIVWEDGTEENIGDVPDWVATRVDDFLNELEEEDDE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |