Scaffold Ga0209535_1003124

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1003124
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10632
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F048647	Metagenome	148	Y
F049291	Metagenome / Metatranscriptome	147	Y
F060432	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100312411	F060432	AGGA	MSKKKTVIPYTITHEERLTLLEAHNNLRTALSTVAECQDLWMSDVRNLEKLECDLHRIFKFVPKQDDAGHFTRYADWILEEADTNE
Ga0209535_100312413	F002430	AGGAG	MMITLNLPPKQVNAMLVAMDAEIEMQLGGRPVDWESFPEVAALLIAYYNTRCKFEDNQDA
Ga0209535_100312415	F048647	GGAG	MTKKLYNVKIDLCVWYDRNFEIEATCEDEARNIAHDIAREQTMHLIGADIDVENDGGWTYVDQDYHTVHVELEE
Ga0209535_100312417	F049291	GAGG	MRSNIKKMRIKKVSKKAPEWQRQRLKEQSWRGILNKTFDLSEPDQEAIAIHKGRRYP