Scaffold Ga0209535_1003005

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1003005
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10909
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049286	Metagenome / Metatranscriptome	147	Y
F050370	Metagenome / Metatranscriptome	145	N
F077246	Metagenome / Metatranscriptome	117	N
F091977	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100300511	F091977	N/A	MTLTEKKIQRMIDNYQFMQTCFIPYDDKTPAEQMTQLYYFLRDQMEDVERIDRQDASDRRTQLNSNGYTGKAGH
Ga0209535_100300512	F077246	AGG	MDLSNNNIVIIPESWDDINNYIRDTFKHKAYATVLALMVENYTLHEFSKMGGYAFSEWKQEYLKNA
Ga0209535_100300513	F049286	N/A	MLSQNGNRSILKMPKYEITRSYTVYCIATVEADSHKHAKEIALYDDSIPGRYDADVYWKEYDGDYEADITVEEIEKS
Ga0209535_100300516	F050370	N/A	MNYIHEVYIPCAVGRKTFEDAKTLLTNIHGGCTAYNGVGHWNDEGTNTDGTTNSVQMREEVWIVRVVSDDPTFSGLNLIEAELFKRNEKCVMSTTQEIS