Scaffold Ga0209535_1002962

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1002962
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10999
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000589	Metagenome	1006	Y
F003230	Metagenome	499	Y
F003593	Metagenome / Metatranscriptome	478	Y
F035797	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100296217	F000589	N/A	MAHSKHIKGDRAELIAAEYFITIGYSVHRNMSQHGPVDLVLIDEDGTGDVILVDVKAISLRTKNGYKVNRSTTKKQKELDVQLVFVDLDTREVLDVMPTKKDKKVKKTDMTNVVLFERKK
Ga0209535_100296222	F035797	GAGG	MTMYMYGKRNKKKIKNYSRNNVILSLWSRSVGIYNFRVDTRVDILCLR
Ga0209535_100296225	F003230	N/A	MKDEDKTYENETIINFKQAQTNDTINKLRNNIRDLLSINTQYKTELADQIVKINKLEQEVKDLKKEKLDYYNVS
Ga0209535_10029623	F003593	N/A	MIKKWIEKIFGKFCQCKDEHIEFYEDVPKEKIKIVCEKHPNSYKKTCPSCRQAA