Scaffold Ga0209535_1002758

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1002758
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11417
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012719	Metagenome / Metatranscriptome	278	Y
F025717	Metagenome	200	N
F026287	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100275811	F026287	AGAAG	MVKKQNNLVKNPLLLVTFLFFLFTLCSCSIKSCKIQPNYDEIGDSALENKENLSETNLTHAIVRCEISNK
Ga0209535_10027584	F025717	GAG	MLKQQLEKLDFYKGVKFEVKGKQLLARSKDRTSLQEQTEKYFKRLKISYSPRKKNTELNVTGASQVLVFKPMAAKGAGGLKFEDQIINDLNNWFKGAEYDELKHPDTIEQLIKTLRYKQDSTYYAKGVGSENTRRPPTFTKTKATVTNNSKGKVSDVNIYNRNNRVLHHLSLKFSNSFYIYNATVINYFKSPTASVRTMINEFFGFDGVKMGKAFGKEYMAKTPKNYNYSAILTRFKDLLIQCLGPDIVLVLKVGQGNNHIDNIKGFGHKISLSGLTKDSYGYAETGVRKYNFIRFKAMVNGHSYDIDFQFRGTTSTDTGPRYLRILFKAK
Ga0209535_10027587	F012719	AGGA	MVGVGANSLAIYPLGPLATLAGGLCWLAVSIMWKEAALITTNLVLSTITIVGLAYTYIH