Scaffold Ga0209535_1002742

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1002742
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11447
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F030928	Metagenome	184	Y
F049295	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100274211	F049295	N/A	MSDEIVVEWIPEDTGAPYEMDMKEVIIDTPSHVVDKWCKKKFGHTNWARMGVMSPEELIGNPHEFDFDEGIIYFKNAHLV
Ga0209535_10027426	F003020	AGGAG	MPDTSSFKSVSVSVGTHNQLKTLAENRFEVPVSIQKVIDFMLEKELKKKNGKSR
Ga0209535_10027427	F004988	AGAAG	MVSLVETICPRCDGNGYIKVQKKELNCPQCEEKFMHMGGEVTTHNGYVMLPKDQTRINIEGGREAIHKKAKKL
Ga0209535_10027428	F030928	GGTGG	MKEWLKELEAYTSFCIMGFTIFICVIVIIVNCKYIIKLESTIETMWHEIEQVKETNISLFQFIEEHKNDFD
Ga0209535_10027429	F000720	GAGG	MTLIKENTRVRTEIPNRMMSATFALPIDGRRVVGIVNYTATETGLTPLAFWVKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEEIIMGKQPDKKQRMLSTDPYAMKE