NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1002479

Scaffold Ga0209535_1002479


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1002479 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12037
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (58.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018014Metagenome / Metatranscriptome237Y
F033992Metagenome / Metatranscriptome176N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100247925F018014GGAMIVNLTKNEIKHLVYLMGRGDGDYPELNQNLLNKLEPLIEVCTCKEKDSETEQ
Ga0209535_100247926F033992AGGAGMTHEYDLTEQSDLDMLDEVDGEYYNWDQNHSGYLWLTDACVDKYGLVRGMDVEPIDWENLYKDDDYYDEYRERGLKWDLYIQQYASVHDKDGKYLRDCTYDDWEVCKANGIKEEMLSDEGCEVMGWCDG

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