 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025120 Open in IMG/M |
| Scaffold ID | Ga0209535_1002020 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13335 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (45.83%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000464 | Metagenome / Metatranscriptome | 1105 | Y |
| F002602 | Metagenome / Metatranscriptome | 544 | Y |
| F004235 | Metagenome / Metatranscriptome | 447 | Y |
| F012226 | Metagenome / Metatranscriptome | 282 | Y |
| F024812 | Metagenome / Metatranscriptome | 204 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209535_100202013 | F000464 | N/A | MYSHHEHDLDVEEEFWPIMGILLAILGVWTGTIHLIDWLTFDAIVWWAEPFTIAPIIFLLVMKEKFDSLNPLHWWPMFWGYNAKLPDEDRITIRPTDVERIMRQHGGRLNVHIMDYEHIKFRRKKDAVIFGLRYF |
| Ga0209535_100202014 | F002602 | AGGA | MKNTDQIKALVVAIEDKENTIRKLSAEVGNLEVQNADYSQIVKELSDKLELYEKKHGTVFKPARNTSDQK |
| Ga0209535_10020205 | F012226 | N/A | MHEYRIHTLVDISDNGNLKRQFPFTTTAGNEIKDKHTLAVARDQNSNFSTMLQLLQMRGNITWDHTPQKIELPDLGNHAFGSYYEGAHTTWHFQFFTEQSGVYGDFVDPTASLVEDFSLIPIVADCTNTAHLPIHTFVTKEMQGTDRQKIIGALAGGVINTYFSYAGPTDK |
| Ga0209535_10020206 | F024812 | AGGAG | MPATKNNFSHITNVELEGVATSSFTVDFINAMTAETSDLSSGSATAGLEAVRAVIGSYINILSEGPLAESDKQKTYTVRTDSLGTLISADTLQTAIRALNGAGSVTATISGATVTATDIAILTAAVV |
| Ga0209535_10020207 | F004235 | GGAGG | MPIAPNRTVTALIGEQDFIGKAITMIAVDWDVDADASREAMEAVSNTILSRATILAAGAVYDTGTKQDFLLEGDHTSTINSFTSLDGTVTGTLAQVLVEDIINLGTVDSINFGSGTVAVTIKTTFKYA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |