Scaffold Ga0209535_1002003

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1002003
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13413
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012529	Metagenome / Metatranscriptome	280	Y
F020815	Metagenome	222	N
F044198	Metagenome	155	N
F087896	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100200314	F044198	AGGAG	MQPKNVPCHIRIKVKPTQQQNGRACRLHGKDFKSIADAARHWNVNYSWAAEQVSKGWNKEGFPQKYRKSYV
Ga0209535_100200319	F012529	AGGAGG	MLEDKTYKVKVGDYNDAVIFVYERHRKCLNPDDKPEDHRWKHWKEVLTAIPVNNDFEDYQDTSGQFYTNVRATVDALAELYSSSPDYEMGVEYVMNTHQYINV
Ga0209535_100200322	F087896	AGGAG	MKYKTSQGVELANDGYTKVTVKESLGYGWEATLYNNDRLVLTQDATGETLSIPPESTQTLRDIFKSIKET
Ga0209535_100200324	F020815	AGGAGG	MRLYMNKQGEWVGTQAEAKKIDASMVDVPVDKPNLLKWLNTFTGAIDVAAKEVIQDKPNPGRVTQKAHAWETIRECAQKASIDDMTVALAILMDRVQDIADKQKETQQ