Scaffold Ga0209535_1001584

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1001584
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15426
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (90.32%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015346	Metagenome / Metatranscriptome	255	Y
F022555	Metagenome	214	Y
F026042	Metagenome	199	Y
F048646	Metagenome	148	Y
F063682	Metagenome	129	N
F105878	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100158417	F026042	AGGCGG	VTYNVLRLLEQEGYIKEGEDNLIHAEKAFFAARVMGWIKNKAATEKDFDLSPYLKMLTYYKLDLADLKFSEDEDTILYQMKKNDKEVQELVDSLIESARKPVSKTEEPDPDT
Ga0209535_100158424	F022555	AGAAG	VSIAPKFKPGQLVKYDHPANPLLGLVMSTQFSRRRGDPVFVLVQWCGKFRNEEEYIPQAELKLVEDV
Ga0209535_100158428	F015346	GAG	MEHRLYNVGELVAVASNRVLGIITRSNYWALDEYLGGELEFVDVMFGSSISKQYPVRYLVEA
Ga0209535_100158429	F063682	AGCAG	MKPGDLVRIRKTSIDHMSANWFIWHAEHKTPLVLIEELNKSYWNVLKPDGETVFIHKSHLTKRMY
Ga0209535_10015843	F048646	GGAGG	VLKVSEVYEKQIKKIKERPDGSEFVNFGKVYDTRETLINTHYVVSVHPHEFASDIEREKFEDSFPEGTKFCTFVVDGNSFRRSEITVVGSFGKFCRILEDNSQ
Ga0209535_100158430	F105878	GGA	MKVGQIIKLTPQGLNNFAPGIRKKIDGELGLVIQEKYDLSHKLDQDKLPERVKVYPALVRFESLQSMNFLETGSVMVFPDQAEIIS