NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1001557

Scaffold Ga0209535_1001557


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1001557 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15549
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002260Metagenome / Metatranscriptome577Y
F003807Metagenome467Y
F051963Metagenome / Metatranscriptome143N
F070054Metagenome123Y
F078735Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209535_10015571F070054N/AIMNRMVTELSLYMHPIELDKCMDFMWTLESGEFDTNMSVSDCEWQLKIILGSERFEMIRDKWKQDNTKLMTVYGKLKYKCKKDGKVYDGLDPEDKETDYEKIYV
Ga0209535_100155712F002260AGGAMSVPFQRISDATVADIIFYDPSAERRASQMQVDWDTYFNVGSQEILYWLEFGWWPQYCDTVMGATLYSNLPNGQMISAFNPNLLIKNDQTLIRLDTFMATKIFYESIVSDTSNVNSVDAANFGHALARYEKEQEKALQLMNFYDLNQDAPDGPTTKLEENWVADPDFFNNNRRWF
Ga0209535_100155713F051963AGGAGVALPLVDKAKVVTYLKTVAKIQTPIIEVSSTFPSEDDNIAYGLYVDDVTNNGRSINQLGVQACASMYDAEDQFNILYISFQGDPQAPVILSSINDLAANVTFFDGYKSVEFDRDVTIGQRSEIHNYTFTLTRLEFNNAYQS
Ga0209535_100155715F003807AGGAMSNSEVWLKSDEDKLKSLISDEAKMMPMLDNMQATIRQLKAKQTFRLALLNQLLESLDGDTKYNNNNS
Ga0209535_100155717F078735N/AMTSIMQIDTIGKRYGLLPSEVIKRADSFDLFIMDAALTFEQYHNKKSETGKEPVPDYSEEELLKIHKGN
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