Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1001495 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1001495 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15877
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (94.29%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

15877

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (94.29%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F007346	Metagenome / Metatranscriptome	353	Y
F011124	Metagenome / Metatranscriptome	295	Y
F012403	Metagenome / Metatranscriptome	281	Y
F017047	Metagenome / Metatranscriptome	243	Y
F032478	Metagenome / Metatranscriptome	180	N
F035971	Metagenome / Metatranscriptome	171	N
F047976	Metagenome	149	Y
F067120	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100149510	F067120	AGGA	MQIKVEKMKSLKTTKPEGKRDQWRSYNKRKQNVRRTARRNTQIMQEQNYA
Ga0209535_100149512	F035971	AGGAG	MGNLTWNEVAQIETDKRYMNMYGLSQLDMEDMLHEDMPCMLAMSILSDAQHVMSYDQEQARQFINRAKYVIRHIKSDSGLVTTPTTNTNIQTN
Ga0209535_100149514	F032478	AGG	MYWTVGIKMDGISGVYDVHPQPLEQPIWNHAVEHALDMAQAMYPDKHVELEFVKEFDSE
Ga0209535_100149518	F011124	AGGAG	MFDPDKTYAPLVWDMTVAVWDDDADDYVRNEDGSIKLFDIPNYDYSYICDGIDVDDLHERDEGVLTHELLAL
Ga0209535_100149521	F002733	GGAG	MIKGNTIWLQLTRNEANAIMVMLDSEIENTYEVCGIDLSDWENLDLEAYKLLAFRTFKKWYMENCGE
Ga0209535_100149522	F007346	GGAG	VNSNEIKGIQLSQAVMWSGQDIFEVASAAFEDANYHSFNEVFHAAWTEFQKELEDC
Ga0209535_10014953	F047976	GAGG	MAKRGAIIDMGRHKVVGSSWRSMDTQAYSRSYEPETRPEFRCYVSGQAKAWQAEYDAKVAADAKRDAQMQALLDLKQRMINKNLL
Ga0209535_10014955	F017047	AGGAG	LATIYKDEMLQTLWDLFKEVHGVRPRGMGYEKYSVTDLEHEIAHLQRSLEEEIRHEREMEDRAINACMDCGASDIGTAMRWLEDAYEMEWV
Ga0209535_10014959	F012403	AGGAG	MRIKSINPVAKALLQSRRRTQQVPDKTKYNRNKDKDNANKSGKDEVIKDN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1001495

Overview

Ecosystem & Geography

Associated Families

Sequences