Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1001451 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1001451 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16153
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (74.42%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16153

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (74.42%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029471	Metagenome / Metatranscriptome	188	N
F041249	Metagenome	160	Y
F048362	Metagenome / Metatranscriptome	148	N
F062276	Metagenome	131	N
F073589	Metagenome / Metatranscriptome	120	N
F076607	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100145110	F029471	AGGAG	MMSSELNQQDYSDSRLNDMEDVLDCVDMKAGVTSFFNTVISPFADHPDWSMLAEWNANSIIGVFQRHHEQCIKSLDKTKSLMQTALREDVGNEITKLNVDKLIFRRDAQEVNIKRADAILNEFKLCYEVTFGKKFMPQSKTPAKDVTKQMKEYNMTRLKEALGK
Ga0209535_100145111	F048362	AGGAG	MLIKLQNWLMNVAAKWIWIAIMLPIRIILGLIFAVSKHMPNKVELPYKVVKNEQPKEWYK
Ga0209535_100145112	F076607	N/A	MVQIMTKYKQHIIDKLAKLQFDYAECRIEMAEFISSITRLGVDSPGDIEEHRSNAEEARYDYKVSKHQNKF
Ga0209535_100145115	F041249	AGG	MTEDELLTSTNKRTRRNENTIKYGMFGLSLGERNYERLHNYCTKHNLYKATLVRSLVVDYLDRAEQKDDNV
Ga0209535_100145131	F062276	N/A	MKTIICLKNIFKKRQISNNEVVNVFDNIADTLTIDLLKGRSVDAAQVALVSNVMQIASSYNNKKFAIDLLQGALAELESEHFTETGHKLS
Ga0209535_10014514	F073589	AGGAG	MNYKVNIWQDDTLKREIVYSANNDIQAIQMASAATPDGCRATYEQMEEKCPTEKEPMVLKEEDLLRKAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1001451

Overview

Ecosystem & Geography

Associated Families

Sequences