Scaffold Ga0209535_1001246

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1001246
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17461
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (56.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001029	Metagenome / Metatranscriptome	801	Y
F006958	Metagenome	361	N
F028189	Metagenome / Metatranscriptome	192	Y
F055197	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100124631	F006958	N/A	MLSKIEHDLQRYLFVRSNIVNILYDAAIAEKFIRKPSNNRCPSMYQILETYYDKRDWGYHVEPKLKLRGTPKQMQNYDTALDLLLMIETDITDDATLMRKIFWMRANRNKWTVIGKYFGINRTTVKRMYETVLDKLSNKVIASSIDIIIKKFS
Ga0209535_100124634	F055197	N/A	MNKKIKNKYKNVSAYSFTTFNNELVISFDGFEEQKDILEFADFVFGKIKMKYWHTKDIPTFH
Ga0209535_10012465	F001029	AGGA	VKFYNKGIAAHLEAILKLLDDDHLVFENLQGQGPIDIITVNKETGEVTFYDAKSDRTSRHKKRQQSEIQKKLGVKNIYVNLHKRTIRLGSKVEKL
Ga0209535_10012469	F028189	AGGCGG	VIDKFIYKFLGFIDDAFAKVDEVMTFDFPNCKNKKNEKK