Scaffold Ga0209535_1001138

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1001138
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18246
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (40.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002093	Metagenome / Metatranscriptome	594	Y
F024812	Metagenome / Metatranscriptome	204	Y
F049044	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100113812	F024812	AGGAGG	MPITKNNFSHVTNTELEGVETSSFTVDFVNAMNAETADLSSGSALAGLEATRAVISQFINILSEGPLVESNKQKTYTVRTDSLGTLISADTLQGAIRALNGQGSVTATISSATVTATDIGILTAAVV
Ga0209535_100113813	F002093	AGGAG	MAYDTSLPAGGPGNFVSPNTAHEADGVEVDFITVDYISDVSAEVTNPRASAATGGLELSMQAIQNQGVNILGKGVLSNSDTEQTYMVRRDSLDTISSTTTVAAIQAAVRALNAMTPDKVTATISSATAADRDMGDTSVGA
Ga0209535_100113814	F049044	GGAGG	MPATKNNFSLNQNYETQGVDVTLLTVDFIVDVSAETGDLTSGSTTAGLDMTRHAFAHQGLQILAEGPLTDSNTQKTYMVRSDNLDSLSSTTTIAALQAYIRTLDQSSDSFPGVTADLTGATVTASKIGILTAAVIT