Scaffold Ga0209535_1000979

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000979
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19666
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (25.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081205	Metagenome	114	Y
F097128	Metagenome	104	N
F104969	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100097910	F104969	N/A	MKSKKERDILSIEILYDYREELDELVGSKDFNRLLLEEAITTIENALDKERKSARIFYIPNLDCSVILDYRNFNKVLNTAIQFYEQQEEYDECAKLVRLKEQVNESKKRNKTSD
Ga0209535_10009793	F081205	GAGG	MSKNSTQQQYDQLQEWDRWMMNEYPNYKERKKKNKFKPPQYLKPEEEDLNDYYDRKS
Ga0209535_10009799	F097128	AGG	MSQRKEIKQAIEAILGSKITMREDASNPEDELKADFIKVVELYEGVWKRQNNLLEKEGLDFTSYDEQYFKTIEGFIHFCFEGVAADAILFYVYSRQDEDGTLHPFVDPKGKEYMFTTIDDLWEFMLYWAEEMMRP