Scaffold Ga0209535_1000805

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000805
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21840
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (92.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F021674	Metagenome	218	Y
F022282	Metagenome	215	Y
F060430	Metagenome	133	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10008052	F060430	GGA	MIGYMITAIVFSIPTVYYRIKLKEAERKIKRHIETRWMWENWGE
Ga0209535_100080523	F006383	GGAGG	MLVKDKTWKVQQPGTILRARHSARRGQLALVLTKAYHEIRGTETRGNHYVKMQIVSTGERIEESLTNANNCWDIVSEP
Ga0209535_100080524	F021674	GAGG	MERETYNSRLRTNPEDIPVGSLLQIKKHCRKNSIIKEHGEFAILVERPHGTYISHDVLFPNGRRTIFVPMNWEVVSYASQR
Ga0209535_100080525	F069451	GGAG	MKPGDLVRIRKTAIDAYSTLWFINLAERKAPLLLVEKLNKQHWKVLKPDGTDCFLSENKLTTRMW
Ga0209535_100080527	F006867	GGAG	MLYGKELVESIRKRCEIQPGMLVVSLAAGENEIPKVAVVMEVSSACEFERDYEGAEGDIFYKCQPADGTPVFVDYAQNLREYS
Ga0209535_100080532	F022282	GGAG	VNPSFRYQLGDLVEFKRTTRVTEEYTDVEKLTGIVVEQRYVFTADNKFKVRTPDKDYWIRSDHLTLLSSGTK