Scaffold Ga0209535_1000758

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000758
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22592
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032087	Metagenome / Metatranscriptome	181	Y
F058511	Metagenome / Metatranscriptome	135	N
F076587	Metagenome / Metatranscriptome	118	N
F083373	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100075817	F058511	N/A	MTRYALKTTHKGHAFYLAAYYEKLPANNGVYLTLIKEDACSYVTIEKACQVARSLEDSMGCTPSIVEVSY
Ga0209535_100075819	F032087	GGA	MLPMPPETGRQIIMKFLRYEIAHATTADLLRAANFLEGAREVRRGCRKQRTKARKDQQTGWRKHVDGSILW
Ga0209535_100075821	F083373	N/A	MSTHPFDTSTFASVKLKNVPNYLQNEATDYNLRVAAWFDNYAVNAAQFDAAMADQDKLWKMRTAEGWEADEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRCTAGWRIDDTGWYSPEGQHESEWTGPLPEYTLL
Ga0209535_100075824	F076587	GGAG	MAHAQLISYSYTRGSDALFVQAIVDDAVQVLPATHLDPPEFDSAHCQAVILWDEPLDHTNAPTREQVLRMLPWITEWCVIPPIEFDD