Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1000745 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1000745 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22796
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (38.10%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

22796

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (38.10%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011354	Metagenome / Metatranscriptome	292	Y
F032087	Metagenome / Metatranscriptome	181	Y
F051534	Metagenome / Metatranscriptome	144	N
F058510	Metagenome / Metatranscriptome	135	N
F070056	Metagenome / Metatranscriptome	123	N
F076587	Metagenome / Metatranscriptome	118	N
F083373	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100074515	F051534	N/A	MATHLEIEQRQSVIRGWLESGITHSSAATMASVRFHISRSVSYDAIRQAQQTIDSSDDGPAESEQDLEPLSILGTLQHHFNIAAASGDVPAMAKLVQSMDKARSWRGLRQEKVSPLQSPH
Ga0209535_10007452	F070056	AGTAG	MEYAYMGKSLEKVTKPDGSEIWELVELREPQPEPEVCKAVRKRKPSKPAEETPTTTSDF
Ga0209535_100074522	F058510	N/A	MLSQETELNFKVGRYADSLPVEVCVTFAAADSNKRPYIEGTITSPSAQIYDRLNNPATSMRCYCHSDMPLQQQQETIASIEPGTTIKVLAQQPSTKYDNKAFGTLISSLHTFKSENKKLQLLTTGPAQKQTFTVSNMPADLVERMDAKLNAIDVKRTYFLKKLINKFLVGDFDEDFV
Ga0209535_100074526	F076587	GGAG	MAHAQLISYSYTRGSDLLHVQATVDDAVQVLPATHLDPPEFDSAHCQAVIVWDEPLDHTNAPTREQVLRMLPWITDWCVIPPIEFDD
Ga0209535_100074529	F083373	N/A	MSTHPFDTSSFASVKLKNVPSYLQSEAADYNLRVAAWFDNYAVNAAQFDAAMADQDKRWKMRTAEGWEADEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRFTAGWRIDDTGWYSPEGQHESEWTGPLPEYTLL
Ga0209535_100074531	F032087	GGCGG	MKFLQYEIARATTADLLRAANFLEGAREVRRGCRKQRTKARKDQQTGWRKHVDGSILW
Ga0209535_10007455	F011354	N/A	VGTRIITGFCTHLEVDSESRTTEASFAFMTPQDPEDFAGLMVRLASGIEVMIEVEDDDD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1000745

Overview

Ecosystem & Geography

Associated Families

Sequences