Scaffold Ga0209535_1000692

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000692
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23537
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (66.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007835	Metagenome / Metatranscriptome	344	Y
F078591	Metagenome	116	Y
F100959	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100069213	F100959	N/A	MNIGKSGNTNREIRLKLLIKRLDNVNKVVYNYPTMSMFNQSKLIKKLNKNLYYNNTKENTLCQK
Ga0209535_100069221	F007835	GGA	MPFDPKCLRNKREEFVLQKIEYYKVTEYMGRSDWKRYYFDTYRDAVKVFKKLKQTKRKVLIYACRDDKLGEISTGLNDRFSNE
Ga0209535_100069223	F078591	AGG	MALFRGVCSIESCTKCQYMGRSAAQNLVKSTIFRGLTFKSKPDRI