Scaffold Ga0209535_1000602

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000602
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25284
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (4.65%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001913	Metagenome / Metatranscriptome	618	Y
F010473	Metagenome / Metatranscriptome	303	Y
F011526	Metagenome / Metatranscriptome	290	Y
F016205	Metagenome / Metatranscriptome	249	Y
F062182	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100060210	F011526	N/A	MSNEQMIAIVQCFIHHRTNKQVRISLPSKPQHFLLLTKAYENSLPYFIK
Ga0209535_100060216	F001913	N/A	MIKEILELLKDTDCKSEIVQIAKGKNKFPDSFKELIKREWKK
Ga0209535_100060222	F016205	N/A	MIELKNTSICYPTNETWFICWDNTRTEIKAFGSILTDQCLETPWIEIDYYDNEEQWAEILIKNEINPF
Ga0209535_100060232	F016205	N/A	MAELKELKNTIVCYPVPETWFICWDSNRTEITVYGSILPTQCMETHWFQIDYYDNEEDWAKVLLNNGINPFE
Ga0209535_100060233	F062182	N/A	MTQKDLILEIRQEQKRMAKEQLNLAASLSSFLNKQELFNQRISDILENDEKTDKKGLVYEVESNSNRIDEIEINSKVTAGKIAISVTILTFIGSAIWKLITIFD
Ga0209535_10006025	F010473	N/A	VRLTRYEIKIGFFKGLLIGIRHYPFYDNNIYEEDIVIYLGITQIIITRIYEY