Scaffold Ga0209535_1000515

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000515
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27545
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (48.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001294	Metagenome / Metatranscriptome	729	Y
F007610	Metagenome	348	Y
F031654	Metagenome	182	Y
F037293	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_10005152	F031654	N/A	MLYEIDGKPAFRINLYDHTVAHKWKNLIESIYVGDGEDIDHMRTFFSLRTRDEIKDMLLDAVKNINTFLKTEFIKTPKQINWNDQDLYNTLHMAFEKLSGDFDNPTKLIKIAPMNIKENIRDLNHCVHALEHSSSESTLDQLPIQWTKKRITTPRIKLTEKEHNLFQFNQTKNEVYLAYNELGKSYMDLCNDDLPFDYDATKNNHYIGADIDIALKDKKNIFGSNFIDWCKDNDIDPLEKKHGIGMLAIGKIQIINMEHLTKDSKANIIVERN
Ga0209535_100051529	F007610	AGG	MAQSGRRSINIEAPLMITSDKVAVWMDQGEWAMDFFDWLTKVKLNKKLTGLQHMQNKIKLTFITPKDCTMFGLKYASRKK
Ga0209535_100051532	F001294	GAGG	LSKIDLEVSDNLEFDDGDCAVIIKNDGTIGKVIIPKMDTEMLNTEGYRKLLDVIEILQPGSKEKFIKFNEKDKGSVH
Ga0209535_10005159	F037293	AGGA	MIGKHFLDKCLRSTVEQDPWDHQIINDTLPQEDFNTLRKECEELDVPNDKLVVIHPADFVKHNISFYNKIHDISKTLKDNAKTLCKQFPNHRWFEDLGVNAHLSITPPLPYKFYIHQEGLDKIWSSVTYITPEKNVGTKMYTAQNEDAFVKEASWQPNSTFIFCGQQGKTWHSYESNQSEQRITLNLFLTKRNSKCFYPTQ