Scaffold Ga0209535_1000404

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000404
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30223
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (12.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026881	Metagenome / Metatranscriptome	196	Y
F055737	Metagenome	138	Y
F056147	Metagenome	138	N
F101156	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100040420	F101156	N/A	MKKEITLEYDNIALVVVGEYQKGQDGSYMYPDFSSDFNCFKVLCGRQDIIDILEQEVIDELENKAIEIIEEQW
Ga0209535_100040421	F026881	GGA	MKKKQYTTKERFKILESTAATLYVAIEKLSKRIDVIDNFLTKATKDFKED
Ga0209535_100040433	F056147	N/A	MNIEVKIKRYENQSEYYDLKLSTYKETIEGKFCKEDLRYLIQQIDNEII
Ga0209535_10004045	F055737	N/A	MTRNIRTAMSWCLKNDIKLIIKPLSKTGKPDALIEIHIRGKIQIGKEIYRQDKKLHKKIEELYLHLYKTLR