Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1000318 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1000318 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33469
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	49 (83.05%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

33469

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

49 (83.05%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011340	Metagenome	292	Y
F029471	Metagenome / Metatranscriptome	188	N
F056146	Metagenome	138	Y
F065859	Metagenome / Metatranscriptome	127	N
F068921	Metagenome	124	N
F073589	Metagenome / Metatranscriptome	120	N
F104042	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100031823	F068921	AGGA	MKTKAMCLMDERKEFAIKNLTNKLITKVTFKPQTYYWNKKEYPDVLALHLHDGQVLIPSIDEEGNAPGVLFTNIKWGMYI
Ga0209535_100031839	F056146	AGGA	MYNTLLYIGLTFLISGFLLFVVSIIMDRHYEVKLWELKQKERNKYVK
Ga0209535_10003184	F011340	GGAGG	MSADPVTLAVISTSIQAVGTYKGIQAQKAANKAAIRSYEDEKKFNELKAIQDSNNVREEAKKKQKINRAIVAGAGYNDDSRHFLSTQSEIDRIATKDIGNIRINMMRGNQKMDTMIYTTKVMGKAQEFGGYASIASAGFKTAAYAKQYKAGNNSKGQYDLDYLNRTTNKEDDI
Ga0209535_100031840	F104042	AGGAG	MKELIQLKKMLTDAHKEIRSNKKKTLPAFGVEMYLLNCIIQCNVVLNKTNERKENV
Ga0209535_100031841	F029471	AGGAG	MLASEVDSADYSDGRLDSMDTVLDSVDIKAGVKAFFENVITPFAEQKDWAMLAEWNANSIIGCFQRHLDQCIASSDKTRDLMKNAMREDVGTEISMLNVDKLIFRRDAQDLNIKRAEMIVNELLLTYEVAFGKKFMPRAKSSGKDVTKQAQMKEYNLARLKEAMKK
Ga0209535_100031844	F073589	AGGAG	MNYKVNIWQGDNFKREIVYSANNDIQAIQMASAATPDGCRSTFEETNEQEKQCPTVKEPMVQKEEDQAVA
Ga0209535_100031847	F065859	AGG	MSFIHTISQKDRTRLRTIVKRVHLKNYPTHMITDYEADKLVEAFGEETIYNLLKSNVGVNVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1000318

Overview

Ecosystem & Geography

Associated Families

Sequences