Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1000301 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1000301 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34348
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	42 (71.19%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

34348

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

42 (71.19%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043681	Metagenome / Metatranscriptome	156	Y
F045429	Metagenome / Metatranscriptome	153	N
F056971	Metagenome / Metatranscriptome	137	N
F062709	Metagenome	130	Y
F081880	Metagenome	114	Y
F082554	Metagenome	113	N
F101195	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100030112	F043681	AGGA	MALSVENITYDKIMTPLRDKLRTEFKGALPIYFDTKHRDIGTKSLRIYPTQQSLQEKRTNTYLNLYQIEMDYVVKTNLNNEKALDEMYKDVSRIETVLFNNSNGGSIPYFYSAMPTIDHNVDAGIDNAYVSRITVPVLYEEVHEKFVRFITSNDKFFVTSDGSFYIVRS
Ga0209535_100030113	F101195	AGGAG	MAKIYKLKEKVMPRKPSFMKLGYSDWAKLNSGESVELDQLPELAKDYLEEVNQKIKKEVK
Ga0209535_100030119	F081880	AGG	MAITSVKFATSIGGANAGTYSPTQNPNIGTSISKSYDGIRVKKSLGGETYTFANHETSRRQRKLIYENISESNKNKLVALFDLVKGQKTSFFYSEDGFSTNGFEVRFANNKLPVSETSYNVYRVEISIEEQL
Ga0209535_100030123	F082554	GAGG	MMLKINQEEKQVLKYIFKSRYVRELPHAIRVVALDIKKAINNPTKVTEQEYIGLNPTWKHCENCDD
Ga0209535_100030134	F056971	GGAG	MSKEYTDKQINSMILHLRLNNVAEMYYLENEDNSDRNFFDYRTQTYLTKEQVISLALETKWESK
Ga0209535_10003015	F045429	GAGG	MNWLYGITYLVGICLSLSPLYAQSSLKDLQQIQLLSQDECVIVQVNADWNFKASLDLNGLKNCIWFNASIDNKEYGAIIAKEWKIVSVPTIIMFEYGKEIKRFEAGLSFNLDEDKIKKGINGEIDKIMLRRFQ
Ga0209535_100030151	F062709	N/A	MNDLIKEIYKMILELRKVSEANNELLGFVCQKVAPSKIVNKESVDVEEMLTISMEMSEIFDKYDVMPEDFGVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1000301

Overview

Ecosystem & Geography

Associated Families

Sequences