Scaffold Ga0209535_1000286

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000286
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34908
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (64.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F005816	Metagenome / Metatranscriptome	389	N
F022856	Metagenome	212	Y
F035770	Metagenome	171	Y
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100028623	F002399	GGAG	MCQEIRSKHKSIIGQLRKKYGLKDNTPIHKVEIAMSPKDWKDFSEALTFPNGKPTRDK
Ga0209535_100028624	F035770	N/A	MAEFAYARHLRDELGHTGEIIYPNKDASKQDREGVWLLLTITGERLGTVSPNGTVRTT
Ga0209535_100028625	F087206	GAGG	MSNHYNEKEMEDIQNYVLEQDRKGLIEDEISYISFAYGLHPDDDRDEILEFITESILYEKNVGGLI
Ga0209535_100028628	F022856	N/A	MIIFKLIVGNLRDILGKLRDILYPQRVNTRPLEGHISMYIHIHSRAIPFRGIDSTEKERE
Ga0209535_100028631	F005816	AGGAG	MDLTNFNVDTSSEGKTAVEPGRHVLHWQGEEEALVEGRNGWRGCKMYFEIDGTSIRLNHTFTVGHDNPKYVDSGIKSMLLMGQAMGLQQPPKDTSSAFMGKSVSAELIKDDNGYLKINEDWGKTWQATKQKPKPVVEDDNIKAGPSEADLDAMGSTVASEDDAPF