Scaffold Ga0209535_1000263

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000263
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35955
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011932	Metagenome / Metatranscriptome	285	N
F014251	Metagenome	264	Y
F018641	Metagenome / Metatranscriptome	234	N
F026436	Metagenome / Metatranscriptome	198	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100026322	F026436	N/A	MQKTEWIYESPDKGNTVYRRRTDSRERELVIKKPDAHTISPYLTEIVTESANDPALKEMLDKLQVYWSLRNAKN
Ga0209535_100026325	F014251	AGGA	MASDNLRSRVTEKASRLLNKIADELLNSNPNAIFRNGDSIMAFADYEIVKESSDEYSIYRDDFLIETCSSCRIALSYCILDKNKMLLDAKNLVVLEDKLLGRQSEMMHYRHVITSPNTDDFRKEVVLHRLDSAKYEYQVIQKQLTKSINVAKYCQQKGFDNEII
Ga0209535_100026327	F011932	GAG	MRILEFTSRSDKPSAQQLTALAEYLLGRADDEDTQHTVPIDVFLSMAHNMGVNITDQQLRTLATVDPLKNIISNVDADNIILVGAGVTGEEGEDTMTPDQAQDTVAGMADAANPLT
Ga0209535_100026335	F018641	GGAG	MFEKDKIYSLRLSDSSEIICKIVSSDAEKTIISNPFSLLPTQNGVQLLPAMMSADFAKNVTINTNNITLTCETSMDVHATYIQAVTGIVTPTKTILTG