Scaffold Ga0209535_1000257

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000257
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36387
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (62.75%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020349	Metagenome / Metatranscriptome	224	Y
F029403	Metagenome	188	Y
F048929	Metagenome	147	N
F049560	Metagenome	146	N
F053229	Metagenome / Metatranscriptome	141	Y
F093737	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100025725	F093737	GAGG	MTDISKYKSIIVRVETHAKLKNLAGKDRKISGVVAQLVDKEWKKEHRKTV
Ga0209535_100025726	F048929	AGGA	MLNDIKTKIVLAVQRQRMYDPVLKDTVDKVLVTFNDGNVSGYLADDWDSMLSQVDSMLEKAFLIEPNINRPQLD
Ga0209535_100025728	F049560	N/A	MESGWQTLEDAIKITPPEVSSVGYVLKETKEYIILAADIGSDKMDNDVGRVTVIPGQWILEIKIIL
Ga0209535_100025733	F053229	GGAG	MTEKVLDFKKPKKRRVIKDDSFVVRLPYPLTIHTLVDIVERMGIDHEGTVLPGLKFIERSIVKIEREE
Ga0209535_100025737	F029403	N/A	MHPRQFKATISLKKAIIKFLEEGYYVFQNCSEQGPIDIIVVNPKNGKCFLFDVKTSRGTSTIVNGKSVGGTGNKLKDKQKELGVRLVVVEGEEVRIIETRKTILSRQKKQKRFLNKARKGIDFLEEH
Ga0209535_100025747	F020349	AGG	MGKKRKEKKVNSWENIDQELVGSLTTEFKALHALYISQEVDPLAIASAFLAAGQWAMNKELGLKETQDLLHLLANYKYEVVPQNNRTIH