Scaffold Ga0209535_1000240

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000240
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37179
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (21.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008190	Metagenome / Metatranscriptome	337	Y
F042621	Metagenome / Metatranscriptome	158	Y
F059985	Metagenome / Metatranscriptome	133	N
F080618	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100024010	F080618	N/A	MVNNWKNLNFFDKNGKCYNFDYDSSEDKWSGSIYLSEVSIGLFEVGQIFILEQFVNKNTNTKAFGFPHGIEVPTGTTGSTNGVCNWLVEWQTSDPTEIMLFQFNMNFNSGTQTSLEMEPDGPPLQIITELEVPLGYDPTETVSPDGYIVTDTIISEALQINIAIRSEVENTYKRTLLIKDDCTGNVVAEILVYGETISEDERLKVMTQNMGYNVLESDSDIFRNTNIKELLPNFEEVNLKRKEIMMEGSNIYPFIGSYKGLINAIKFFGYDTLQVKEFWKNVDANSPMFGKYIQSNNIALFDPKVQFNDKSITLPNKKFRKTSLFSLVYRINEIVPDKYDIEDLPITEENYDFTIEEILLKLFGLKKKLENEFLPLNARIKDITGEADFFGLLEVVNTISRNDKTEIVAGIDTNFKLSTDDCIYMEDLRSFSQFCLASEAIVDIAIINYCNAFIAPISSAVGIGRNLLLGPITPGEVYPPSPIGPDLNGPLGNPSDGSNYLVKDLSDAFLAYFTRYAPKLSKVGAWPDGESSYYLPDKPDIPVGAMTVLENTSFNNITWDNVDSTWNQLNDANKFFTFDIDPQGVFVGDVFTVTDPDTNTGATYTATLGDTDTDVRNALYDQLINLKTSFTDPWLFWDITKESGVTGDVLRLFGQNVDRLTVTCESSVGSVLLFSQLPGETLFTWEGIERGNFDEIEWTIYKDATDVSPSYYRVFRGPISQYNKLPLILPYVGLYSVEMKLFDLYNNISSNVKSDFICVESREVEYSGWYQSRKENYTWNSESKYLWNDYGSLWNLPIEPSITWADETPSLYSSLDRVNAILNNFGLGTSPDFQLLNYQDDGKASFSGPYRWDNLTTGGWNDTYHLWWDMTSTTGDTPAFFQFKEVIPETYLKIIDENGETAEHYFDSTIDTLAKAASGLNTSKNKIINKYIYNVVYDASNNQKFIQAVCRYFGVHGDWKYVDIVYANGDRVCPTTGVTGVPFPTGETDCPSLIYRKGLHKASNPTWNTAKFINNGKTLPKMTWLMFVYDKCKIPGKNKPRWIIKNTTNSNMADIYFESKYLTYLFKESGKYEITLELTDTNGNKYKKGRNILVIK
Ga0209535_100024024	F008190	N/A	METSIEFNFIYSKDAIKVKSYLGTVPRNIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMKQLQTVLDRSTTTSIFYVLGNLNEHTVKGIKRYVESLTTKEIEYNIYHSPDINVNGSAKLFENVVEFE
Ga0209535_100024025	F059985	N/A	MIKIVLEPARNGVIKRVIDDNHGGGKEQWTSTDVFESNDSNRNKYEYIMKFFFELCEDLGLECGNKFEKDVLRIKTEWGTHYEPNKKDVESKIKELQAEIDLLTEWKQA
Ga0209535_100024027	F042621	GGA	MENTEEVKLQWIKGDKFGNVEIVNGTQDQWTTFKSGGRIATNLISEFLEPVVGNALDLNPPQTIKDPHKLDNQDLEGTDMKWVTKKATSETISPIRTLFDKQKKNDKVKLNLSFPIEVLNKAIYEIISSSFDADEVNDELESFIKDQISEDLILDSLFDSIRELIKTRYKID