Scaffold Ga0209535_1000235

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000235
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37643
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010571	Metagenome	302	Y
F015800	Metagenome / Metatranscriptome	252	Y
F100938	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100023535	F015800	N/A	MKIDDKKILQVVNLSPSESWIEKIVDIHPMKQITVASIVQVIVFGFMLFMFWINSKIL
Ga0209535_10002356	F010571	AGGAGG	MSNITTETYAEKLYEELYDKHYREVGKTTDDVDYIEREAERLALIDLDNFEMEG
Ga0209535_10002357	F003976	GGAGG	MSRTYNDYYFEKEDVLHTLEKLEMSVRFLNVWVNEPMGLENAKYVLEKNANRKFDWFDRNMVKELLEEVDDE
Ga0209535_10002358	F100938	AGGAGG	MSDWLDGTKPKIIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGTTSWYDGDEGETDYKWARYENVLDEDWNKVEGLN