Scaffold Ga0209535_1000220

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000220
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39028
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (20.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011769	Metagenome / Metatranscriptome	287	Y
F015276	Metagenome / Metatranscriptome	256	Y
F087328	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100022017	F015276	N/A	MEKVIVEYDNGVVSTYDVVLWRTYKKGKKEVLQQNISSLINHPSVVEYKIVEPKRKRGDGKSLSAKYESKNVKEDIPMPMKIADEIVMFAKGDGKGFTKEVVKKWNKYFDFDLPSKFERYGFSGSSRLNTIFKI
Ga0209535_100022055	F087328	N/A	MEEQWKEIDEHLSIIAGNLGICCQDSCDAPNAIHSLEKVMELLVEIKEKL
Ga0209535_100022061	F011769	N/A	MANPNFKGRPVGSGKSTFIEDPVMGDFKIAIDEYSFNVIDTIKTKTVGFFTTLPQAILAIAKHQMLEDRTYSLTEYAEKFKNTHLKLKEAILK