Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1000143 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1000143 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45879
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	66 (84.62%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

45879

Total Scaffold Genes

78 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

66 (84.62%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028553	Metagenome	191	N
F028624	Metagenome	191	N
F029154	Metagenome / Metatranscriptome	189	N
F030152	Metagenome	186	Y
F051967	Metagenome	143	N
F080516	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100014337	F028624	GGAGG	MMIPCPECDHTDYHGKVEKEVHQRFGGTLEPVGEWVDCDYCDGSGEVEEEDDG
Ga0209535_100014340	F051967	AGGAG	MLPRTAQAHTPLRTSKSRHTWCGPYAAAVFMRQHYDAAYEVCLCHTFRGKITGMSNKLMKTVMGANGIQMTLHYCREVGSYARHNPTLAAWLKTRDRKKTYLVNITGHYIVVSGDKTIDNQSGEWHSVRKSKHRRKRVAYAWEIKSPH
Ga0209535_100014341	F030152	N/A	MKITKAAIQALATQSVKAQYARETDKALYLEEIIVLAGFDISLTDRPDQWDRCVEWLENAIAARWTAARYLV
Ga0209535_100014364	F029154	AGGAG	MELQKIHGLITNITQHYSAFAVNTEGQNTFITNNLARFLQLSVGDQVLMEVVPNHPDKAQTIPYRAVGCVKLKESLPEESPEQPEHGVLTEIIERQKQTPQQIAEDLKAVLKAADTYLITSEVIAAYREDNPDHAATTDKDINNNLARLHGKGKIAKAEVWGSPEQSKCSFNLWAHNVSRFTL
Ga0209535_100014365	F080516	AGG	MNLERIEELGQILSKLDLTISHMLSCKITPDDFPDLNDALTMLEEARGMLRKAYQNVRTEYDSK
Ga0209535_100014375	F028553	GGA	MDEKQGAFADLDFKDKFDDFDLPVSGNINIDGTSNEPRSELDLYRTFDGRMGSIKPSIGYTIEETKSRDGMADVRNKARTVRLGLDGSTTLGPVDLSGNVMGSRTMQDKTYTFPFATFTQGSSSTFSKLGAAAKMGAFDFEINRQKSSGMEPVYSGSIGMNFGNGGRISYSDSSTGEPRIDARYRMEF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1000143

Overview

Ecosystem & Geography

Associated Families

Sequences