Scaffold Ga0209535_1000115

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000115
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49540
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (58.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000499	Metagenome / Metatranscriptome	1074	Y
F001746	Metagenome / Metatranscriptome	643	Y
F003977	Metagenome / Metatranscriptome	459	Y
F006819	Metagenome / Metatranscriptome	364	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100011513	F000499	N/A	MQKEIHNEDYFGTLMSILVDESRRMMPTFNPTAETHKIQNDMCKAGTWLTQVPLNTIIQSPPQDSVKKIEAQSLPEYRRLAATLIEHFIKEFKTQGGDDAKIREHFERMYKWKQ
Ga0209535_100011544	F003977	AGGAG	MPKKQSKEDIDYKEGVAVFNQWNRHNKNLEKMGLHGTDYYVRRVEELEAKVKRLEARLKTKGKK
Ga0209535_10001156	F001746	N/A	MRKNHNKLYYGKYRHKTVFKMPGSLMFYPTTDEHLVWLKKEYADAPDMNHLASFIMANRKNVKFRMQDKKTIFYSDLDKSQHLIERFWDFWIGSETVDPKFKNLGKDTVGCTRLPHGKYQYQVYLKKDAQSLINETQKRNLWEFLERNVDDCLVTNYNIIDFLENKSPYCFGGYFYVKEEKYLTPIYMLAQQAIDKVIQFRKVKNGSNKKTTR
Ga0209535_100011560	F006819	AGG	MSDGNISPDGRWKIIIEDNQVKWVELTETEDQYKIQELVDATKRILPEIW