Scaffold Ga0209535_1000101

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000101
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51852
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (86.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019753	Metagenome	228	N
F047374	Metagenome / Metatranscriptome	150	Y
F047978	Metagenome	149	Y
F069360	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100010116	F047374	AGAAG	MNWLWIKIKQGAWKIIFLAIVVLGLVVFLYNIARPSKDRSKVLEGVQTNVLTAIKENEIRATLEKDKIGAIKKIYDRKIKDTKKIEDREERLKALIRLHEELDL
Ga0209535_100010118	F047978	AGAAG	MRILVVTTLLFSLNAVAGEVTEFKPRPATVEEGTDTYVGILLSEEDFRNILQDKIDINAKIASCDVGKKVCTQLQETYKLSVKSLEEIIAKDNTWFRRNKGALGLLSGLVIGVGTSIAIVKAVHQGQ
Ga0209535_10001012	F069360	GGCGG	MKEADDFDWDAFGFSDEERGESEGRSSHYDDLVGLDRGDTFTIGNRKPVYRVVGALTDRGEAKGSQTKLVVIDGSAERKTYEIRTTGEDYEVGAFGKDENNEHTILVGKTGFVMNIAKPAGTKI
Ga0209535_10001013	F019753	N/A	MDREREAWQNIKDNATSDYHYAEVYDATPTPKPNYITATVWTTIVAVLVCGVFSGFLLYLYNESNIEETLSQAVDQAIVSLEQTIQLQSKEISELKEENKKIHRYLKLWTPMDTQRLRQRYEDRHKPPTADDLFNSGPDIIIRGRALPPLQKLNQEEKLCLPF