Scaffold Ga0209535_1000084

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000084
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55161
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (78.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020895	Metagenome / Metatranscriptome	221	N
F024442	Metagenome / Metatranscriptome	206	Y
F046082	Metagenome / Metatranscriptome	152	N
F065209	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100008414	F065209	AGG	MTQEERERSTERRLINMTTSKSICEIRLHNAMVRNNLTLEECINAIDSYAMDKKFHDDLDSLYNVEQDTWDDWHDGDIK
Ga0209535_10000842	F020895	N/A	MIVHGTIMPTIKAYEIVLEIDGQESCITLDDTFPAIDSWASACSMAVLMAKHIHPSKEVEFVSCAEYEADEYADIGYVYDAPVVLQ
Ga0209535_10000843	F046082	AGGAG	MAANIKLTERMLNKSEINANKTVKQFLLDDFGMEYTDPFFTVGNKLTVVGEYIDGEEADINFFRRSGRGDTMLSIQKLKQYADAGNEVRLISDSESDGDGTRIFISVHSTGEETDAA
Ga0209535_100008471	F024442	AGGA	MKNSTATSGTSIDALVKEGKALGSIWRQVNSLKQTTKESGFDTRLGKLLQQLKASSTVDSGQIPTHVLRTHGIQQIDRRRRSEALWFVENEKECRQFIVDNKFKGSSLTALQAAMRKAAKADDADNSEAEPSNVGQSEATEQPKADAPKQRYSKTAIVNAVIAQAELNEVDLEEIINDLIEVLADRQTAAA