Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1000083 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1000083 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	55271
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (18.46%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

55271

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (18.46%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002033	Metagenome / Metatranscriptome	601	Y
F004370	Metagenome / Metatranscriptome	441	Y
F029449	Metagenome / Metatranscriptome	188	N
F034539	Metagenome / Metatranscriptome	174	Y
F057746	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100008313	F057746	N/A	MAIIGSFQEDLDIYLADYKGRSGASKQSEKDLSGIGSIAKGLLDNGKMYSFEYFTPDETFYDTYPLVLGLGKSDNDHQLGVNIHYIPYDARIPFLSDVFKSFKSTITSAINKAPGNPMAQPRLNEFTYDNLKKSLGRKYNLTYAVRQYRLDRMRKPRMLGYEDWYIGAVNNQNHFFGGNINEAQALYYKNI
Ga0209535_100008318	F004370	AGAAGG	MYKVRKINFGWYKRRHGILLENLPPLKQKLLLENNHMKWLDSDVNAFEIIFKVEDMNEHEKNPNRILWNPFRETFTNIKELEKDSDLVDWNCGICKVEIKSRMDSKKVENFVCSKCSEAHNSRNNRVDQRIIDSSVRFLKHCKSLLKGEQREFMTYVRRSSKG
Ga0209535_10000833	F034539	AGAAG	MLPKNLNTAKLKVKHVLGNHTSLSDYPDSEDIIYELIRDYCGKVAKEIKFTNVSLKKKYSLDDKKANSIIMQLRNDKIIKVSLSNSAYTTYEVIKNPYE
Ga0209535_100008358	F002033	N/A	MSKFNNFFSTHGIKIVLVLLLLSYFKSCSIDSEVERIKKEQRILTTEIDTLSSQIVNKEEMIYLIKTVPAWKTLRIEEISDKERISINALEEKED
Ga0209535_100008359	F029449	AGAAG	VASRVPIIPGVPTPSDPQCSLTYCGRIIAQVDCIKYIMQGTTACIDIQLFGSNDLPLNLNNFCDIHIQLTNELECVIANFWYPDIPSGSKGYLLDILQFTDTSGVIHNEGLIRICLSADCTKVSPGNVFAEILLTECGGGNTGDPTGVGPTGTLPTGSVEVYGIPCLWVATILESKINKNGGATGCGTGGFVTGVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1000083

Overview

Ecosystem & Geography

Associated Families

Sequences