Scaffold Ga0209535_1000075

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209535_1000075

Scaffold Ga0209535_1000075

Overview

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1000075 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	57305
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (85.53%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040869	Metagenome	161	N
F066135	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100007558	F040869	AGGAG	MNMKVFKQVYNELSLLQEEDTDDLNIAEESLMAAMTFTMTNAPSALNGLCLISNTFNGILAEYTLKDIQLRGE
Ga0209535_100007563	F066135	GGAG	MNGLRIHSVDNIKVKREDYESFTTITVTVTDKTDQDFELTLFTDKGFVPDMEVEYDS

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