NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209535_1000075

Scaffold Ga0209535_1000075


Overview

Basic Information
Taxon OID3300025120 Open in IMG/M
Scaffold IDGa0209535_1000075 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57305
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (85.53%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)48.9699Long. (o)-130.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040869Metagenome161N
F066135Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209535_100007558F040869AGGAGMNMKVFKQVYNELSLLQEEDTDDLNIAEESLMAAMTFTMTNAPSALNGLCLISNTFNGILAEYTLKDIQLRGE
Ga0209535_100007563F066135GGAGMNGLRIHSVDNIKVKREDYESFTTITVTVTDKTDQDFELTLFTDKGFVPDMEVEYDS

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