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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025120 Open in IMG/M |
| Scaffold ID | Ga0209535_1000042 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 68126 |
| Total Scaffold Genes | 102 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (47.06%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 48.9699 | Long. (o) | -130.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010682 | Metagenome | 300 | Y |
| F013839 | Metagenome / Metatranscriptome | 268 | Y |
| F025263 | Metagenome / Metatranscriptome | 202 | Y |
| F097249 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209535_1000042102 | F013839 | N/A | MASTSTNKQPLMVDRPFFRGAKINSGTTVISDQGNPDFSDLIQLVRVGDIPSEDGAMVEDIFLVSNEGYPDDSGVRTAAFGVYVYAPNQAAPSTSTALL |
| Ga0209535_100004252 | F097249 | AGGA | MKLSIFDLPRGSKDYVELPSKRCINVHVSRVSNDTMVHVQANSEQWPQEYSDTLVHCKDGVSVLHSVTKNLTADDIDYLQTHFTN |
| Ga0209535_100004294 | F010682 | GAG | MVYTPQSNWKYDKNLYHPIQSGPQRTGNDQNLTDTYLTISSGYIPPSNIQQTWNGVLDQGADFGRIPVGPPNLSGYFSTEWKAITPAPSGYWTNYENVNPRASGLLTSYEGYRQQGLYSTANSTVQTAIGPQPGLRNFGSFTWYGEQVPDNQLYSPFQTPGSNTNTSDGGGITGGAVAQPRIAAPALTNPTNDQSGSRAAWVYHYPVYCQTFTESRYTGVPGQMGSPVRNSYRGKSSRYVPNYGSVYGKLGEGVRNMVRTFSPSVNSSNQKSL |
| Ga0209535_100004296 | F025263 | AGGAGG | MTINPNQVHVSKIYPGNYTNVLRYWHEEKTMQFENANGVQTSYTNQPVGGPVGVVFQPGWIAQQAVGYLDLSFQALGTTNQLSYYTQAYASGTPFLNGNVIIPSPDFHKDVRADIADGIKAPAGAYVYRASLRVDGGDVVSSGVFGGSATPQLTLIPAVGEGLRDNGTVVSGQFGVSLTGASSRIANGSVGSTNIIDSSSLAALGSETQWKLFTTTDLGGASASGLAQGSGIYDPRATNGKLSGENKALAIAEVCWIVADEPPERQDVALQPDGLVESQTYTSTSPS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |