Scaffold Ga0209535

Basic Information
Taxon OID	3300025120 Open in IMG/M
Scaffold ID	Ga0209535_1000025 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025120 Open in IMG/M

Scaffold ID

Ga0209535_1000025 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	79583
Total Scaffold Genes	130 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (44.62%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

79583

Total Scaffold Genes

130 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

58 (44.62%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	48.9699	Long. (^o)	-130.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

48.9699

Long. (^o)

-130.6666

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F025263	Metagenome / Metatranscriptome	202	Y
F098268	Metagenome	104	N
F099144	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_100002539	F025263	AGGAGG	VINAKQLHVAKIYPGNYTNVLRYWHEVRSIASQNANGVDTTMTGQPVGGPVGVVFQPGWIAQQAVGYVDMSYQALGTNNQLAYYAQPYGSGQNSDQQPFLNANVIVPSPDFHKDVRADITDGIKVPATAYVYRASLRLSGGDIVSSGVAGSDSTPELTLVPAMGEGLKDDGTVVSGQFGATITGANSAIANGSVASTNIFDSSSWAALGSETTWKLFTTNDQAASGLYQGSGVYDPRAGVNKLAGDDKALAICEVCWIIPDEPPERQDVALQPDGLTESQVYTSTSPS
Ga0209535_100002545	F001215	AGGAG	VASTSTNKQPMMVDRPFLRGARITSATPTVDPVNTQFANLVQLVRVGDIPSEDAAIVEDLFVVSNESYPDNGGVRAAAFGIYIYAPNQAAPSTAASILINKFTVGLSGSTEGLIQRVELPKTIAPTPQVGDTALVRPIELGGSEALYLEKGYVLGVGYLGDSVVAVSGGLSPSGISIWAQGGFY
Ga0209535_100002546	F098268	GGTGG	VSKRRKGSDFFGWDNFAPKSSRFDFGAVKGANTARSINRPMPWHQKFRPEQNLKDFSILFDYNYASMWTRWRRGYELFMYTNQALVGLNYTFRYAMNGQSGSGGSEIPGLMYMYPSTQQDMGMRMVVIKPRDSINLLDLGLSVKSVFNYDILNKVIGVELSSNFGPPVSDMTGELVSDRFRADGTPKTTYNNYTVIAVGTKTGGPQVPTGAANLDTLFLSVDAERSFTTIKDESFAAPAASNPIVGEFLSSAMRFGCNCPDYLAREDFNLYKYAQKKTYPYTGTQDLKPGTYDAGTETFSGERPTNTRDLPGFVRDFGFIYTKVLLGAPQGTDSKQSSYSDPNLLFFQPRFCKHIYASWWDMQNRFGNYSYLKSFLAQPSDEPMDGRYREYFQRTLEKQTQFLQTAESLNWWESYSPARSDVPNHVLYSDMNPTMVKVLNFDTLASGVSIPLVPSGFVMFDIDEFNPLQPVPPEARPIFDGGIYQNGSPSGVSGTIIYDGGQYLNGSPLPPLFSPIVNGGTY
Ga0209535_100002585	F099144	N/A	MAQVTFNRELGAAPVGITRFSQYRSENGGNVVVNFTTEDTSEGFFKRADKYGVTSSATGTGTVTLQAGSMSVKRVFIMDGTDGSVLGEVAPPKTSNRLDVSFTFSVGASVENYLYVEKTDRSPCVYRVTYTAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209535_1000025

Overview

Ecosystem & Geography

Associated Families

Sequences