Scaffold Ga0209535_1000010

Overview

Basic Information

• Taxon OID: 3300025120
• Scaffold ID: Ga0209535_1000010
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 135444
• Total Scaffold Genes: 167
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (32.93%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004688	Metagenome / Metatranscriptome	428	Y
F074754	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209535_1000010111	F074754	N/A	MKNTTTTTTTRFDHALYGLSDEDLKTKLTNRVVTYFNSDESSVKNDGVRQFVIKSIDYTGHAKGSGRRYIQGEVQDLDDGGKTKFRTLHVAGIEKVKGRVATAYQLAKSVF
Ga0209535_1000010122	F004688	N/A	MIKEHTMPCIHMNGSGETSLRRQYNELFEAVSEAQIKLLFDTDFHQRDYYPLGDEAWDKAYQEREEVKKAMNTVYQYAKQHMHFLEYGKEPLPDEH