Scaffold Ga0208790_1057115

Overview

Basic Information

• Taxon OID: 3300025118
• Scaffold ID: Ga0208790_1057115
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1212
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014628	Metagenome	261	Y
F099431	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208790_10571152	F014628	GAG	MKLSKKQVESKFPPIINGTYKKDKPNESIGYQKWEVRKTYEVEMTYEIVAKTKDDAENLLDKEECIKLEEVDGYGRTFLETIKGQHSNDMSGDEPTTWKKIEECVPSEDTDSDNDFKPFLNYEDGDWQKDDYQWLKNEDGTNIEKK
Ga0208790_10571154	F099431	GGAG	MKALKKDTLKNGDVFKISFLPRGDDDVPRHQWQVSFRKAKWITDNPKQNCFTAKCKTKAHSYLKFLDVAKDAIRTASTEFASVFVNINGESYEYKGEDDRNI