Scaffold Ga0208790_1051640

Overview

Basic Information

• Taxon OID: 3300025118
• Scaffold ID: Ga0208790_1051640
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1291
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026399	Metagenome	198	Y
F055183	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208790_10516403	F055183	AGGAGG	MDNCIIQLEVDYCPTSGCGGPSITNVGVFKNKTHAKRFIRTDKGFKKLIKAYNSFRIKKNILPIAIWAVPGDK
Ga0208790_10516404	F026399	AGGAG	MEDVPILDKGIDDWGSDEQEEAYDKLQSLKQDCEGEPSKLYI