Scaffold Ga0208790_1043060

Overview

Basic Information

• Taxon OID: 3300025118
• Scaffold ID: Ga0208790_1043060
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1444
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056665	Metagenome	137	Y
F092719	Metagenome	107	N
F092855	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208790_10430601	F092855	GGA	MANLNLHGNLSDNEKLLLRAKEDLILFGKLFSPQDFLASATPDFHVEVGKHLIDPKIQQLGLVLPRDHAKSTLA
Ga0208790_10430602	F056665	N/A	MASLLSLEMNRLEPKPVSLGAGDTLMVRVAGYGFCPPHCEIDHNHIGHYKNYNCEELQCEHITINEK
Ga0208790_10430604	F092719	GGAGG	MANQNLSPMQNEKNDEDDMVFQDPCPVCKEELYLDNEYTQRIGLLDDLDKIIGWICPHCKTEYDNDTKIVRFLGGDDIGGEA