Scaffold Ga0208790_1019815

Overview

Basic Information

• Taxon OID: 3300025118
• Scaffold ID: Ga0208790_1019815
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2312
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → Anaeromyxobacter diazotrophicus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022523	Metagenome	214	Y
F083398	Metagenome	113	Y
F101067	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208790_101981510	F101067	GAG	MKTPTLDLHGLRHHEVANAVARFIESHLAQGFLRVAPFIDIITGNSNQMLFEAVKVVQQYGLEYMTGLPYHQGRVR
Ga0208790_10198154	F083398	N/A	MIKPGDIVYLRRRGGILQYEKPVKDQLGLVIKEHREKGAISQFYVQFDQKDPKWYYQHDLYEIRGERK
Ga0208790_10198157	F022523	N/A	MKIGDLVEFTYGRVGGQIEGIGIFAEQGYYGKHKILFMGKGYWVPESCIKVISMKRKDPANEPLLN