Scaffold Ga0208790_1016556

Overview

Basic Information

• Taxon OID: 3300025118
• Scaffold ID: Ga0208790_1016556
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2570
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019113	Metagenome	231	Y
F034892	Metagenome	173	Y
F042854	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208790_10165563	F034892	GGA	VIDVGDLIRIRGKDWLGKRLGIVTEVRALVHDESGTEYSAVTALIAGQYYTFPDEAFELVTAAERKKN
Ga0208790_10165565	F019113	N/A	MDKFEVGDLVRDNLNKGAGNYGLGVIVKIDVATLLGEKWDRSGHPADHDIPGKRYAVYFNKFERTITFHGDYLEKV
Ga0208790_10165566	F042854	GAG	MEITLRKFERELEKYTRNRMRELRGEAPSPWEDDPFIDAYTSRRIREMRLEHEMEQREIDLDNVALGGYTVATMEAYSGKS