Scaffold Ga0208790_1013363

Overview

Basic Information

• Taxon OID: 3300025118
• Scaffold ID: Ga0208790_1013363
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2919
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053225	Metagenome	141	Y
F054784	Metagenome	139	Y
F088736	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208790_10133631	F088736	AGGA	MNDTNLIPDTKLNQTKVRQAAAQFMVERVLTKDEIMEHAMSYLEHLYAGHSISDLAAMVKNTDIPNHIRADGPSQPNRMLCYGTIPGYTGDGAEYYFYDKEQDYEYSACEVKGVQ
Ga0208790_10133633	F054784	AGGAG	MKLENLGKNQTRLIMQIQDHKEDFTWDKDIYFSYGTPVLVVNYRDAEIHETAERYSSTTSKHINQFKSMCNRYDDRGGPVEFEHGREWQTFMAPESRMRVVAEQC
Ga0208790_10133636	F053225	AGGAG	MRKFTQSILGKGVTFTKLCKVRDSKGRVDYARQDIDGIVVENDGYVATVRGWDGTMHTNVETAELQTWQEADSNIEDELSCLV