Scaffold Ga0209835_1014656

Overview

Basic Information

• Taxon OID: 3300025115
• Scaffold ID: Ga0209835_1014656
• Source Dataset Name: Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 52m metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2639
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Lake Kivu
• Coordinates
  • Lat. (^o): -1.78
  • Long. (^o): 29.2
  • Depth (m): 52

Associated Families

Family	Category	Number of Sequences	3D Structure?
F090293	Metagenome / Metatranscriptome	108	N
F098942	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209835_10146565	F098942	AGGAG	MKVRKKRKQESLRFVVKWIEGDSIFFRWFKRDRYAVEFQQELIDDGIPPEDVRIHMI
Ga0209835_10146566	F090293	AGGAG	MSERTTTIKRSIAPVTVTVEITATRINENGTLSGITAKIVKQPIKGNEFKTSVPPMAGGAIYLKATSLDGLKLVDGDAPKATTAKVKLF