Scaffold Ga0208433_1131229

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208433_1131229

Scaffold Ga0208433_1131229

Overview

Basic Information
Taxon OID	3300025114 Open in IMG/M
Scaffold ID	Ga0208433_1131229 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	602
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)		Depth (m)	135
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047715	Metagenome	149	N
F064782	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208433_11312291	F047715	N/A	CPTCTSSKDETVYLKLYGEEYKDIMSSTVKMEWFMECPRCEQLFDGGDLYIEREHGLKSRSGIKEH
Ga0208433_11312292	F064782	GAG	MDLKAEAVLKNIRKEIQKIRDRNRKMKNHPYAENTMVMIGLMRAVEIVEGLRNEEMEKLIDWREEQKRIVSN

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